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Cofactor (biochemistry)

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The succinate dehydrogenase complex showing several cofactors, including flavin, iron–sulfur centers, and heme.

A cofactor is a non-protein chemical compound or metallic ion that is required for an enzyme's role as a catalyst (a catalyst is a substance that increases the rate of a chemical reaction). Cofactors can be considered "helper molecules" that assist in biochemical transformations. The rates at which these happen are characterized in an area of study called enzyme kinetics. Cofactors typically differ from ligands in that they often derive their function by remaining bound.

Cofactors can be classified into two types: inorganic ions and complex organic molecules called coenzymes.[1] Coenzymes are mostly derived from vitamins and other organic essential nutrients in small amounts. (Some scientists limit the use of the term "cofactor" for inorganic substances; both types are included here.[2][3])

Coenzymes are further divided into two types. The first is called a "prosthetic group", which consists of a coenzyme that is tightly (or even covalently) and permanently bound to a protein.[4] The second type of coenzymes are called "cosubstrates", and are transiently bound to the protein. Cosubstrates may be released from a protein at some point, and then rebind later. Both prosthetic groups and cosubstrates have the same function, which is to facilitate the reaction of enzymes and proteins. An inactive enzyme without the cofactor is called an apoenzyme, while the complete enzyme with cofactor is called a holoenzyme.[5][page needed]

The International Union of Pure and Applied Chemistry (IUPAC) defines "coenzyme" a little differently, namely as a low-molecular-weight, non-protein organic compound that is loosely attached, participating in enzymatic reactions as a dissociable carrier of chemical groups or electrons; a prosthetic group is defined as a tightly bound, nonpolypeptide unit in a protein that is regenerated in each enzymatic turnover.[6]

Some enzymes or enzyme complexes require several cofactors. For example, the multienzyme complex pyruvate dehydrogenase[7] at the junction of glycolysis and the citric acid cycle requires five organic cofactors and one metal ion: loosely bound thiamine pyrophosphate (TPP), covalently bound lipoamide and flavin adenine dinucleotide (FAD), cosubstrates nicotinamide adenine dinucleotide (NAD+) and coenzyme A (CoA), and a metal ion (Mg2+).[8]

Organic cofactors are often vitamins or made from vitamins. Many contain the nucleotide adenosine monophosphate (AMP) as part of their structures, such as ATP, coenzyme A, FAD, and NAD+. This common structure may reflect a common evolutionary origin as part of ribozymes in an ancient RNA world. It has been suggested that the AMP part of the molecule can be considered to be a kind of "handle" by which the enzyme can "grasp" the coenzyme to switch it between different catalytic centers.[9]

Classification

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Cofactors can be divided into two major groups: organic cofactors, such as flavin or heme; and inorganic cofactors, such as the metal ions Mg2+, Cu+, Mn2+ and iron–sulfur clusters.

Organic cofactors are sometimes further divided into coenzymes and prosthetic groups. The term coenzyme refers specifically to enzymes and, as such, to the functional properties of a protein. On the other hand, "prosthetic group" emphasizes the nature of the binding of a cofactor to a protein (tight or covalent) and, thus, refers to a structural property. Different sources give slightly different definitions of coenzymes, cofactors, and prosthetic groups. Some consider tightly bound organic molecules as prosthetic groups and not as coenzymes, while others define all non-protein organic molecules needed for enzyme activity as coenzymes, and classify those that are tightly bound as coenzyme prosthetic groups. These terms are often used loosely.

A 1980 letter in Trends in Biochemistry Sciences noted the confusion in the literature and the essentially arbitrary distinction made between prosthetic groups and coenzymes group and proposed the following scheme. Here, cofactors were defined as an additional substance apart from protein and substrate that is required for enzyme activity and a prosthetic group as a substance that undergoes its whole catalytic cycle attached to a single enzyme molecule. However, the author could not arrive at a single all-encompassing definition of a "coenzyme" and proposed that this term be dropped from use in the literature.[10]

Inorganic cofactors

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Metal ions

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Further information: Metalloprotein

Metal ions are common cofactors.[11] The study of these cofactors falls under the area of bioinorganic chemistry. In nutrition, the list of essential trace elements reflects their role as cofactors. In humans this list commonly includes iron, magnesium, manganese, cobalt, copper, zinc, and molybdenum.[12] Although chromium deficiency causes impaired glucose tolerance, no human enzyme that uses this metal as a cofactor has been identified.[13][14] Iodine is also an essential trace element, but this element is used as part of the structure of thyroid hormones rather than as an enzyme cofactor.[15] Calcium is another special case, in that it is required as a component of the human diet, and it is needed for the full activity of many enzymes, such as nitric oxide synthase, protein phosphatases, and adenylate kinase, but calcium activates these enzymes in allosteric regulation, often binding to these enzymes in a complex with calmodulin.[16] Calcium is, therefore, a cell signaling molecule, and not usually considered a cofactor of the enzymes it regulates.[17]

Other organisms require additional metals as enzyme cofactors, such as vanadium in the nitrogenase of the nitrogen-fixing bacteria of the genus Azotobacter,[18] tungsten in the aldehyde ferredoxin oxidoreductase of the thermophilic archaean Pyrococcus furiosus,[19] and even cadmium in the carbonic anhydrase from the marine diatom Thalassiosira weissflogii.[20][21]

In many cases, the cofactor includes both an inorganic and organic component. One diverse set of examples is the heme proteins, which consist of a porphyrin ring coordinated to iron.[22]

Ion Examples of enzymes containing this ion
Cupric Cytochrome oxidase
Ferrous or Ferric Catalase
Cytochrome (via Heme)
Nitrogenase
Hydrogenase
Magnesium Glucose 6-phosphatase
Hexokinase
DNA polymerase
Manganese Arginase
Molybdenum Nitrate reductase
Nitrogenase
Xanthine oxidase
Nickel Urease
Zinc Alcohol dehydrogenase
Carbonic anhydrase
DNA polymerase
A simple [Fe2S2] cluster containing two iron atoms and two sulfur atoms, coordinated by four protein cysteine residues.

Iron–sulfur clusters

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Further information: Iron–sulfur protein

Iron–sulfur clusters are complexes of iron and sulfur atoms held within proteins by cysteinyl residues. They play both structural and functional roles, including electron transfer, redox sensing, and as structural modules.[23]

Organic

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Organic cofactors are small organic molecules (typically a molecular mass less than 1000 Da) that can be either loosely or tightly bound to the enzyme and directly participate in the reaction.[5][24][25][26] In the latter case, when it is difficult to remove without denaturing the enzyme, it can be called a prosthetic group. There is no sharp division between loosely and tightly bound cofactors.[5] Many such as NAD+ can be tightly bound in some enzymes, while it is loosely bound in others.[5] Another example is thiamine pyrophosphate (TPP), which is tightly bound in transketolase or pyruvate decarboxylase, while it is less tightly bound in pyruvate dehydrogenase.[27] Other coenzymes, flavin adenine dinucleotide (FAD), biotin, and lipoamide, for instance, are tightly bound.[28] Tightly bound cofactors are, in general, regenerated during the same reaction cycle, while loosely bound cofactors can be regenerated in a subsequent reaction catalyzed by a different enzyme. In the latter case, the cofactor can also be considered a substrate or cosubstrate.

Vitamins can serve as precursors to many organic cofactors (e.g., vitamins B1, B2, B6, B12, niacin, folic acid) or as coenzymes themselves (e.g., vitamin C). However, vitamins do have other functions in the body.[29] Many organic cofactors also contain a nucleotide, such as the electron carriers NAD and FAD, and coenzyme A, which carries acyl groups. Most of these cofactors are found in a huge variety of species, and some are universal to all forms of life. An exception to this wide distribution is a group of unique cofactors that evolved in methanogens, which are restricted to this group of archaea.[30]

Vitamins and derivatives

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Cofactor / Prosthetic group Vitamin Additional component Chemical group(s) transferred Distribution
Thiamine pyrophosphate[31] Thiamine (B1) pyrophosphate 2-carbon groups, α cleavage Bacteria, archaea and eukaryotes
NAD+ and NADP+[32] Niacin (B3) ADP Electrons Bacteria, archaea and eukaryotes
Pyridoxal phosphate[33] Pyridoxine (B6) None Amino and carboxyl groups Bacteria, archaea and eukaryotes
Methylcobalamin[34] Vitamin B12 Methyl group acyl groups Bacteria, archaea and eukaryotes
Cobalamine[5] Cobalamine (B12) None hydrogen, alkyl groups Bacteria, archaea and eukaryotes
Biotin[35] Biotin (H) None CO2 Bacteria, archaea and eukaryotes
Coenzyme A[36] Pantothenic acid (B5) ADP Acetyl group and other acyl groups Bacteria, archaea and eukaryotes
Tetrahydrofolic acid[37] Folic acid (B9) Glutamate residues Methyl, formyl, methylene and formimino groups Bacteria, archaea and eukaryotes
Menaquinone[38] Vitamin K None Carbonyl group and electrons Bacteria, archaea and eukaryotes
Ascorbic acid[39] Vitamin C None Electrons Bacteria, archaea and eukaryotes
Flavin mononucleotide[40] Riboflavin (B2) None Electrons Bacteria, archaea and eukaryotes
Flavin adenine dinucleotide[40] Riboflavin (B2) ADP Electrons Bacteria, archaea and eukaryotes
Coenzyme F420[41] Riboflavin (B2) Amino acids Electrons Methanogens and some bacteria

Non-vitamins

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Cofactor Chemical group(s) transferred Distribution
Adenosine triphosphate[42] Phosphate group Bacteria, archaea and eukaryotes
S-Adenosyl methionine[43] Methyl group Bacteria, archaea and eukaryotes
Coenzyme B[44] Electrons Methanogens
Coenzyme M[45][46] Methyl group Methanogens
Coenzyme Q[47] Electrons Bacteria, archaea and eukaryotes
Cytidine triphosphate[48] Diacylglycerols and lipid head groups Bacteria, archaea and eukaryotes
Glutathione[49][50] Electrons Some bacteria and most eukaryotes
Heme[51] Electrons Bacteria, archaea and eukaryotes
Lipoamide[5] Electrons, acyl groups Bacteria, archaea and eukaryotes
Methanofuran[52] Formyl group Methanogens
Molybdopterin[53][54] Oxygen atoms Bacteria, archaea and eukaryotes
Nucleotide sugars[55] Monosaccharides Bacteria, archaea and eukaryotes
3'-Phosphoadenosine-5'-phosphosulfate[56] Sulfate group Bacteria, archaea and eukaryotes
Pyrroloquinoline quinone[57] Electrons Bacteria
Tetrahydrobiopterin[58] Oxygen atom and electrons Bacteria, archaea and eukaryotes
Tetrahydromethanopterin[59] Methyl group Methanogens

Cofactors as metabolic intermediates

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The redox reactions of nicotinamide adenine dinucleotide.

Metabolism involves a vast array of chemical reactions, but most fall under a few basic types of reactions that involve the transfer of functional groups.[60] This common chemistry allows cells to use a small set of metabolic intermediates to carry chemical groups between different reactions.[61] These group-transfer intermediates are the loosely bound organic cofactors, often called coenzymes.

Each class of group-transfer reaction is carried out by a particular cofactor, which is the substrate for a set of enzymes that produce it, and a set of enzymes that consume it. An example of this are the dehydrogenases that use nicotinamide adenine dinucleotide (NAD+) as a cofactor. Here, hundreds of separate types of enzymes remove electrons from their substrates and reduce NAD+ to NADH. This reduced cofactor is then a substrate for any of the reductases in the cell that require electrons to reduce their substrates.[32]

Therefore, these cofactors are continuously recycled as part of metabolism. As an example, the total quantity of ATP in the human body is about 0.1 mole. This ATP is constantly being broken down into ADP, and then converted back into ATP. Thus, at any given time, the total amount of ATP + ADP remains fairly constant. The energy used by human cells requires the hydrolysis of 100 to 150 moles of ATP daily, which is around 50 to 75 kg. In typical situations, humans use up their body weight of ATP over the course of the day.[62] This means that each ATP molecule is recycled 1000 to 1500 times daily.

Evolution

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Further information: Abiogenesis

Organic cofactors, such as ATP and NADH, are present in all known forms of life and form a core part of metabolism. Such universal conservation indicates that these molecules evolved very early in the development of living things.[63] At least some of the current set of cofactors may, therefore, have been present in the last universal ancestor, which lived about 4 billion years ago.[64][65]

Organic cofactors may have been present even earlier in the history of life on Earth.[66] The nucleotide adenosine is a cofactor for many basic metabolic enzymes such as transferases. It may be a remnant of the RNA world.[67][68] Adenosine-based cofactors may have acted as adaptors that allowed enzymes and ribozymes to bind new cofactors through small modifications in existing adenosine-binding domains, which had originally evolved to bind a different cofactor.[9] This process of adapting a pre-evolved structure for a novel use is known as exaptation.

Prebiotic origin of coenzymes. Like amino acids and nucleotides, certain vitamins and thus coenzymes can be created under early earth conditions. For instance, vitamin B3 can be synthesized with electric discharges applied to ethylene and ammonia.[69] Similarly, pantetheine (a vitamin B5 derivative), a precursor of coenzyme A and thioester-dependent synthesis, can be formed spontaneously under evaporative conditions.[70] Other coenzymes may have existed early on Earth, such as pterins (a derivative of vitamin B9), flavins (FAD, flavin mononucleotide = FMN), and riboflavin (vitamin B2).[71]

Changes in coenzymes. A computational method, IPRO, recently predicted mutations that experimentally switched the cofactor specificity of Candida boidinii xylose reductase from NADPH to NADH.[72]

Evolution of enzymes without coenzymes. If enzymes require a co-enzyme, how does the coenzyme evolve? The most likely scenario is that enzymes can function initially without their coenzymes and later recruit the coenzyme, even if the catalyzed reaction may not be as efficient or as fast. Examples are Alcohol Dehydrogenase (coenzyme: NAD⁺),[73] Lactate Dehydrogenase (NAD⁺),[74] Glutathione Reductase (NADPH).[75]

History

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Further information: History of biochemistry

The first organic cofactor to be discovered was NAD+, which was identified by Arthur Harden and William Young 1906.[76] They noticed that adding boiled and filtered yeast extract greatly accelerated alcoholic fermentation in unboiled yeast extracts. They called the unidentified factor responsible for this effect a coferment. Through a long and difficult purification from yeast extracts, this heat-stable factor was identified as a nucleotide sugar phosphate by Hans von Euler-Chelpin.[77] Other cofactors were identified throughout the early 20th century, with ATP being isolated in 1929 by Karl Lohmann,[78] and coenzyme A being discovered in 1945 by Fritz Albert Lipmann.[79]

The functions of these molecules were at first mysterious, but, in 1936, Otto Heinrich Warburg identified the function of NAD+ in hydride transfer.[80] This discovery was followed in the early 1940s by the work of Herman Kalckar, who established the link between the oxidation of sugars and the generation of ATP.[81] This confirmed the central role of ATP in energy transfer that had been proposed by Fritz Albert Lipmann in 1941.[82] Later, in 1949, Morris Friedkin and Albert L. Lehninger proved that NAD+ linked metabolic pathways such as the citric acid cycle and the synthesis of ATP.[83]

Protein-derived cofactors

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In a number of enzymes, the moiety that acts as a cofactor is formed by post-translational modification of a part of the protein sequence. This often replaces the need for an external binding factor, such as a metal ion, for protein function. Potential modifications could be oxidation of aromatic residues, binding between residues, cleavage or ring-forming.[84] These alterations are distinct from other post-translation protein modifications, such as phosphorylation, methylation, or glycosylation in that the amino acids typically acquire new functions. This increases the functionality of the protein; unmodified amino acids are typically limited to acid-base reactions, and the alteration of resides can give the protein electrophilic sites or the ability to stabilize free radicals.[84] Examples of cofactor production include tryptophan tryptophylquinone (TTQ), derived from two tryptophan side chains,[85] and 4-methylidene-imidazole-5-one (MIO), derived from an Ala-Ser-Gly motif.[86] Characterization of protein-derived cofactors is conducted using X-ray crystallography and mass spectroscopy; structural data is necessary because sequencing does not readily identify the altered sites.

Non-enzymatic cofactors

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The term is used in other areas of biology to refer more broadly to non-protein (or even protein) molecules that either activate, inhibit, or are required for the protein to function. For example, ligands such as hormones that bind to and activate receptor proteins are termed cofactors or coactivators, whereas molecules that inhibit receptor proteins are termed corepressors. One such example is the G protein-coupled receptor family of receptors, which are frequently found in sensory neurons. Ligand binding to the receptors activates the G protein, which then activates an enzyme to activate the effector.[87] In order to avoid confusion, it has been suggested that such proteins that have ligand-binding mediated activation or repression be referred to as coregulators.[88]

See also

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References

[edit]
  1. ^ Hasim, Onn H.; Adnan, Nor Azila (2010). "Coenzyme, Cofactor and Prosthetic Group — Ambiguous Biochemical Jargon" (PDF). Biochemical Education. 22 (2): 93–94. doi:10.1016/0307-4412(94)90088-4.
  2. ^ "Coenzymes and cofactors". Archived from the original on 1999-08-26. Retrieved 2007-11-17.
  3. ^ "Enzyme Cofactors". Archived from the original on 2003-05-05. Retrieved 2007-11-17.
  4. ^ Nelson DL, Cox MM (2008). Lehninger Principles of Biochemistry (Fifth ed.). New York: W.H. Freeman and Company. p. 184. ISBN 978-1429224161.
  5. ^ a b c d e f Sauke DJ, Metzler DE, Metzler CM (2001). Biochemistry: the chemical reactions of living cells (2nd ed.). San Diego: Harcourt/Academic Press. ISBN 978-0-12-492540-3.
  6. ^ de Bolster, M. W. G. (1997). Glossary of Terms Used in Bioinorganic Chemistry (PDF). Pure & Applied Chemistry.
  7. ^ Jordan F, Patel MS (2004). Thiamine: catalytic mechanisms in normal and disease states. New York, N.Y: Marcel Dekker. p. 588. ISBN 978-0-8247-4062-7.
  8. ^ "Pyruvate Dehydrogenase Complex". Chemistry LibreTexts. 2013-10-02. Retrieved 2017-05-10.
  9. ^ a b Denessiouk KA, Rantanen VV, Johnson MS (August 2001). "Adenine recognition: a motif present in ATP-, CoA-, NAD-, NADP-, and FAD-dependent proteins". Proteins. 44 (3): 282–91. doi:10.1002/prot.1093. PMID 11455601. S2CID 10848692.
  10. ^ Bryce (March 1979). "SAM – semantics and misunderstandings". Trends Biochem. Sci. 4 (3): N62–N63. doi:10.1016/0968-0004(79)90255-X.
  11. ^ "Biochemistry: Enzymes: Classification and catalysis (Cofactors)". vle.du.ac.in. Retrieved 2018-02-07.[permanent dead link]
  12. ^ Aggett PJ (August 1985). "Physiology and metabolism of essential trace elements: an outline". Clinics in Endocrinology and Metabolism. 14 (3): 513–43. doi:10.1016/S0300-595X(85)80005-0. PMID 3905079.
  13. ^ Stearns DM (2000). "Is chromium a trace essential metal?". BioFactors. 11 (3): 149–62. doi:10.1002/biof.5520110301. PMID 10875302. S2CID 19417496.
  14. ^ Vincent JB (April 2000). "The biochemistry of chromium". The Journal of Nutrition. 130 (4): 715–8. doi:10.1093/jn/130.4.715. PMID 10736319.
  15. ^ Cavalieri RR (April 1997). "Iodine metabolism and thyroid physiology: current concepts". Thyroid. 7 (2): 177–81. doi:10.1089/thy.1997.7.177. PMID 9133680.
  16. ^ Clapham DE (2007). "Calcium signaling". Cell. 131 (6): 1047–58. doi:10.1016/j.cell.2007.11.028. PMID 18083096. S2CID 15087548.
  17. ^ Niki I, Yokokura H, Sudo T, Kato M, Hidaka H (October 1996). "Ca2+ signaling and intracellular Ca2+ binding proteins". Journal of Biochemistry. 120 (4): 685–98. doi:10.1093/oxfordjournals.jbchem.a021466. PMID 8947828.
  18. ^ Eady RR (July 1988). "The vanadium-containing nitrogenase of Azotobacter". BioFactors. 1 (2): 111–6. PMID 3076437.
  19. ^ Chan MK, Mukund S, Kletzin A, Adams MW, Rees DC (March 1995). "Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase". Science. 267 (5203): 1463–9. Bibcode:1995Sci...267.1463C. doi:10.1126/science.7878465. PMID 7878465. S2CID 20868012.
  20. ^ Lane TW, Morel FM (April 2000). "A biological function for cadmium in marine diatoms". Proceedings of the National Academy of Sciences of the United States of America. 97 (9): 4627–31. Bibcode:2000PNAS...97.4627L. doi:10.1073/pnas.090091397. PMC 18283. PMID 10781068.
  21. ^ Lane TW, Saito MA, George GN, Pickering IJ, Prince RC, Morel FM (2005). "Biochemistry: a cadmium enzyme from a marine diatom". Nature. 435 (7038): 42. Bibcode:2005Natur.435...42L. doi:10.1038/435042a. PMID 15875011. S2CID 52819760.
  22. ^ Li T, Bonkovsky HL, Guo JT (March 2011). "Structural analysis of heme proteins: implications for design and prediction". BMC Structural Biology. 11: 13. doi:10.1186/1472-6807-11-13. PMC 3059290. PMID 21371326.
  23. ^ Meyer J (February 2008). "Iron-sulfur protein folds, iron-sulfur chemistry, and evolution". J. Biol. Inorg. Chem. 13 (2): 157–70. doi:10.1007/s00775-007-0318-7. PMID 17992543. S2CID 21961142.
  24. ^ Palmer T (1981). Understanding enzymes. New York: Horwood. ISBN 978-0-85312-307-1.
  25. ^ Cox M, Lehninger AL, Nelson DR (2000). Lehninger principles of biochemistry (3rd ed.). New York: Worth Publishers. ISBN 978-1-57259-153-0.
  26. ^ Farrell SO, Campbell MK (2009). Biochemistry (6th ed.). Pacific Grove: Brooks Cole. ISBN 978-0-495-39041-1.
  27. ^ Morey AV, Juni E (June 1968). "Studies on the nature of the binding of thiamine pyrophosphate to enzymes". The Journal of Biological Chemistry. 243 (11): 3009–19. doi:10.1016/S0021-9258(18)93372-7. PMID 4968184.
  28. ^ Hanukoglu I (December 2017). "Conservation of the Enzyme–Coenzyme Interfaces in FAD and NADP Binding Adrenodoxin Reductase-A Ubiquitous Enzyme". Journal of Molecular Evolution. 85 (5–6): 205–218. Bibcode:2017JMolE..85..205H. doi:10.1007/s00239-017-9821-9. PMID 29177972. S2CID 7120148.
  29. ^ Bolander FF (2006). "Vitamins: not just for enzymes". Curr Opin Investig Drugs. 7 (10): 912–5. PMID 17086936.
  30. ^ Rouvière PE, Wolfe RS (June 1988). "Novel biochemistry of methanogenesis". The Journal of Biological Chemistry. 263 (17): 7913–6. doi:10.1016/S0021-9258(18)68417-0. PMID 3131330.
  31. ^ Frank RA, Leeper FJ, Luisi BF (2007). "Structure, mechanism and catalytic duality of thiamine-dependent enzymes". Cell. Mol. Life Sci. 64 (7–8): 892–905. doi:10.1007/s00018-007-6423-5. PMC 11136255. PMID 17429582. S2CID 20415735.
  32. ^ a b Pollak N, Dölle C, Ziegler M (2007). "The power to reduce: pyridine nucleotides—small molecules with a multitude of functions". Biochem. J. 402 (2): 205–18. doi:10.1042/BJ20061638. PMC 1798440. PMID 17295611.
  33. ^ Eliot AC, Kirsch JF (2004). "Pyridoxal phosphate enzymes: mechanistic, structural, and evolutionary considerations". Annu. Rev. Biochem. 73: 383–415. doi:10.1146/annurev.biochem.73.011303.074021. PMID 15189147.
  34. ^ Banerjee R, Ragsdale SW (2003). "The many faces of vitamin B12: catalysis by cobalamin-dependent enzymes". Annu. Rev. Biochem. 72: 209–47. doi:10.1146/annurev.biochem.72.121801.161828. PMID 14527323. S2CID 37393683.
  35. ^ Jitrapakdee S, Wallace JC (2003). "The biotin enzyme family: conserved structural motifs and domain rearrangements". Curr. Protein Pept. Sci. 4 (3): 217–29. doi:10.2174/1389203033487199. PMID 12769720.
  36. ^ Leonardi R, Zhang YM, Rock CO, Jackowski S (2005). "Coenzyme A: back in action". Prog. Lipid Res. 44 (2–3): 125–53. doi:10.1016/j.plipres.2005.04.001. PMID 15893380.
  37. ^ Donnelly JG (June 2001). "Folic acid". Critical Reviews in Clinical Laboratory Sciences. 38 (3): 183–223. doi:10.1080/20014091084209. PMID 11451208. S2CID 218866247.
  38. ^ Søballe B, Poole RK (August 1999). "Microbial ubiquinones: multiple roles in respiration, gene regulation and oxidative stress management" (PDF). Microbiology. 145 (8): 1817–30. doi:10.1099/13500872-145-8-1817. PMID 10463148.
  39. ^ Linster CL, Van Schaftingen E (2007). "Vitamin C. Biosynthesis, recycling and degradation in mammals". FEBS J. 274 (1): 1–22. doi:10.1111/j.1742-4658.2006.05607.x. PMID 17222174.
  40. ^ a b Joosten V, van Berkel WJ (2007). "Flavoenzymes". Curr Opin Chem Biol. 11 (2): 195–202. doi:10.1016/j.cbpa.2007.01.010. PMID 17275397.
  41. ^ Mack M, Grill S (2006). "Riboflavin analogs and inhibitors of riboflavin biosynthesis". Appl. Microbiol. Biotechnol. 71 (3): 265–75. doi:10.1007/s00253-006-0421-7. PMID 16607521. S2CID 12634062.
  42. ^ Bugg T (1997). An introduction to enzyme and coenzyme chemistry. Oxford: Blackwell Science. pp. 95. ISBN 978-0-86542-793-8.
  43. ^ Chiang PK, Gordon RK, Tal J, Zeng GC, Doctor BP, Pardhasaradhi K, McCann PP (March 1996). "S-Adenosylmethionine and methylation". FASEB Journal. 10 (4): 471–80. doi:10.1096/fasebj.10.4.8647346. PMID 8647346. S2CID 11214528.
  44. ^ Noll KM, Rinehart KL, Tanner RS, Wolfe RS (June 1986). "Structure of component B (7-mercaptoheptanoylthreonine phosphate) of the methylcoenzyme M methylreductase system of Methanobacterium thermoautotrophicum". Proceedings of the National Academy of Sciences of the United States of America. 83 (12): 4238–42. Bibcode:1986PNAS...83.4238N. doi:10.1073/pnas.83.12.4238. PMC 323707. PMID 3086878.
  45. ^ Taylor CD, Wolfe RS (August 1974). "Structure and methylation of coenzyme M(HSCH2CH2SO3)". The Journal of Biological Chemistry. 249 (15): 4879–85. doi:10.1016/S0021-9258(19)42403-4. PMID 4367810.
  46. ^ Balch WE, Wolfe RS (January 1979). "Specificity and biological distribution of coenzyme M (2-mercaptoethanesulfonic acid)". Journal of Bacteriology. 137 (1): 256–63. doi:10.1128/JB.137.1.256-263.1979. PMC 218444. PMID 104960.
  47. ^ Crane FL (December 2001). "Biochemical functions of coenzyme Q10". Journal of the American College of Nutrition. 20 (6): 591–8. doi:10.1080/07315724.2001.10719063. PMID 11771674. S2CID 28013583. Archived from the original on 16 December 2008.
  48. ^ Buchanan BB, Gruissem W, Jones RL (2000). Biochemistry & molecular biology of plants (1st ed.). American society of plant physiology. ISBN 978-0-943088-39-6.
  49. ^ Grill D, Tausz T, De Kok LJ (2001). Significance of glutathione in plant adaptation to the environment. Springer. ISBN 978-1-4020-0178-9.
  50. ^ Meister A, Anderson ME (1983). "Glutathione". Annual Review of Biochemistry. 52: 711–60. doi:10.1146/annurev.bi.52.070183.003431. PMID 6137189.
  51. ^ Wijayanti N, Katz N, Immenschuh S (2004). "Biology of heme in health and disease". Curr. Med. Chem. 11 (8): 981–6. doi:10.2174/0929867043455521. PMID 15078160.
  52. ^ Vorholt JA, Thauer RK (September 1997). "The active species of 'CO2' utilized by formylmethanofuran dehydrogenase from methanogenic Archaea". European Journal of Biochemistry. 248 (3): 919–24. doi:10.1111/j.1432-1033.1997.00919.x. PMID 9342247.
  53. ^ Mendel RR, Hänsch R (August 2002). "Molybdoenzymes and molybdenum cofactor in plants". Journal of Experimental Botany. 53 (375): 1689–98. doi:10.1093/jxb/erf038. PMID 12147719.
  54. ^ Mendel RR, Bittner F (2006). "Cell biology of molybdenum". Biochim. Biophys. Acta. 1763 (7): 621–35. doi:10.1016/j.bbamcr.2006.03.013. PMID 16784786.
  55. ^ Ginsburg V (1978). "Comparative biochemistry of nucleotide-linked sugars". Progress in Clinical and Biological Research. 23: 595–600. PMID 351635.
  56. ^ Negishi M, Pedersen LG, Petrotchenko E, Shevtsov S, Gorokhov A, Kakuta Y, Pedersen LC (June 2001). "Structure and function of sulfotransferases". Archives of Biochemistry and Biophysics. 390 (2): 149–57. doi:10.1006/abbi.2001.2368. PMID 11396917.
  57. ^ Salisbury SA, Forrest HS, Cruse WB, Kennard O (August 1979). "A novel coenzyme from bacterial primary alcohol dehydrogenases". Nature. 280 (5725): 843–4. Bibcode:1979Natur.280..843S. doi:10.1038/280843a0. PMID 471057. S2CID 3094647.
  58. ^ Thöny B, Auerbach G, Blau N (April 2000). "Tetrahydrobiopterin biosynthesis, regeneration and functions". The Biochemical Journal. 347 (1): 1–16. doi:10.1042/0264-6021:3470001. PMC 1220924. PMID 10727395.
  59. ^ DiMarco AA, Bobik TA, Wolfe RS (1990). "Unusual coenzymes of methanogenesis". Annual Review of Biochemistry. 59: 355–94. doi:10.1146/annurev.bi.59.070190.002035. PMID 2115763.
  60. ^ Mitchell P (March 1979). "The Ninth Sir Hans Krebs Lecture. Compartmentation and communication in living systems. Ligand conduction: a general catalytic principle in chemical, osmotic and chemiosmotic reaction systems". European Journal of Biochemistry. 95 (1): 1–20. doi:10.1111/j.1432-1033.1979.tb12934.x. PMID 378655.
  61. ^ Wimmer MJ, Rose IA (1978). "Mechanisms of enzyme-catalyzed group transfer reactions". Annual Review of Biochemistry. 47: 1031–78. doi:10.1146/annurev.bi.47.070178.005123. PMID 354490.
  62. ^ Di Carlo SE, Collins HL (2001). "Estimating ATP resynthesis during a marathon run: a method to introduce metabolism". Advan. Physiol. Edu. 25 (2): 70–1.
  63. ^ Chen X, Li N, Ellington AD (2007). "Ribozyme catalysis of metabolism in the RNA world". Chemistry & Biodiversity. 4 (4): 633–55. doi:10.1002/cbdv.200790055. PMID 17443876. S2CID 44873410.
  64. ^ Koch AL (1998). How did bacteria come to be?. Advances in Microbial Physiology. Vol. 40. pp. 353–99. doi:10.1016/S0065-2911(08)60135-6. ISBN 9780120277407. PMID 9889982.
  65. ^ Ouzounis C, Kyrpides N (July 1996). "The emergence of major cellular processes in evolution". FEBS Letters. 390 (2): 119–23. Bibcode:1996FEBSL.390..119O. doi:10.1016/0014-5793(96)00631-X. PMID 8706840. S2CID 39128865.
  66. ^ White HB (March 1976). "Coenzymes as fossils of an earlier metabolic state". Journal of Molecular Evolution. 7 (2): 101–4. Bibcode:1976JMolE...7..101W. doi:10.1007/BF01732468. PMID 1263263. S2CID 22282629.
  67. ^ Saran D, Frank J, Burke DH (2003). "The tyranny of adenosine recognition among RNA aptamers to coenzyme A". BMC Evol. Biol. 3: 26. doi:10.1186/1471-2148-3-26. PMC 317284. PMID 14687414.
  68. ^ Jadhav VR, Yarus M (2002). "Coenzymes as coribozymes". Biochimie. 84 (9): 877–88. doi:10.1016/S0300-9084(02)01404-9. PMID 12458080.
  69. ^ Dowler, M. J.; Fuller, W. D.; Orgel, L. E.; Sanchez, R. A. (1970-09-25). "Prebiotic synthesis of propiolaldehyde and nicotinamide". Science. 169 (3952): 1320–1321. Bibcode:1970Sci...169.1320D. doi:10.1126/science.169.3952.1320. ISSN 0036-8075. PMID 4247738.
  70. ^ Keefe, A. D.; Newton, G. L.; Miller, S. L. (1995-02-23). "A possible prebiotic synthesis of pantetheine, a precursor to coenzyme A". Nature. 373 (6516): 683–685. Bibcode:1995Natur.373..683K. doi:10.1038/373683a0. ISSN 0028-0836. PMID 7854449.
  71. ^ Monteverde, D. R.; Gómez-Consarnau, L.; Suffridge, C.; Sañudo-Wilhelmy, S. A. (January 2017). "Life's utilization of B vitamins on early Earth". Geobiology. 15 (1): 3–18. Bibcode:2017Gbio...15....3M. doi:10.1111/gbi.12202. ISSN 1472-4677. PMID 27477998.
  72. ^ Khoury GA, Fazelinia H, Chin JW, Pantazes RJ, Cirino PC, Maranas CD (October 2009). "Computational design of Candida boidinii xylose reductase for altered cofactor specificity". Protein Science. 18 (10): 2125–38. doi:10.1002/pro.227. PMC 2786976. PMID 19693930.
  73. ^ Comprehensive Enzyme Kinetics. 2004. doi:10.1007/b100340. ISBN 0-306-46712-7.
  74. ^ Garrett, R.; Grisham, Charles M. (2010). Biochemistry (4th ed.). Belmont, CA: Brooks/Cole, Cengage Learning. ISBN 978-0-495-10935-8.
  75. ^ Carlberg, Inger; Mannervik, Bengt (1985), [59] Glutathione reductase, Methods in Enzymology, vol. 113, Elsevier, pp. 484–490, doi:10.1016/s0076-6879(85)13062-4, ISBN 978-0-12-182013-8, PMID 3003504, retrieved 2024-09-21
  76. ^ Harden A, Young WJ (24 October 1906). "The Alcoholic Ferment of Yeast-Juice". Proceedings of the Royal Society B: Biological Sciences. 78 (526): 369–75. doi:10.1098/rspb.1906.0070.
  77. ^ "Fermentation of sugars and fermentative enzymes: Nobel Lecture, May 23, 1930" (PDF). Nobel Foundation. Retrieved 2007-09-30.
  78. ^ Lohmann K (August 1929). "Über die Pyrophosphatfraktion im Muskel". Naturwissenschaften. 17 (31): 624–5. Bibcode:1929NW.....17..624.. doi:10.1007/BF01506215. S2CID 20328411.
  79. ^ Lipmann F (1 September 1945). "Acetylation of sulfanilamide by liver homogenates and extracts". J. Biol. Chem. 160 (1): 173–90. doi:10.1016/S0021-9258(18)43110-9.
  80. ^ Warburg O, Christian W (1936). "Pyridin, the hydrogen-transferring component of the fermentation enzymes (pyridine nucleotide)". Biochemische Zeitschrift. 287: E79–E88. doi:10.1002/hlca.193601901199.
  81. ^ Kalckar HM (November 1974). "Origins of the concept oxidative phosphorylation". Molecular and Cellular Biochemistry. 5 (1–2): 55–63. doi:10.1007/BF01874172. PMID 4279328. S2CID 26999163.
  82. ^ Lipmann F (1941). "Metabolic generation and utilization of phosphate bond energy". A Source Book in Chemistry, 1900-1950. Adv Enzymol. Vol. 1. pp. 99–162. doi:10.4159/harvard.9780674366701.c141. ISBN 9780674366701.
  83. ^ Friedkin M, Lehninger AL (1949). "Esterification of inorganic phosphate coupled to electron transport between dihydrodiphosphopyridine nucleotide and oxygen". J. Biol. Chem. 178 (2): 611–23. doi:10.1016/S0021-9258(18)56879-4. PMID 18116985.
  84. ^ a b Davidson VL (2007). "Protein-Derived Cofactors. Expanding the Scope of Post-Translational Modifications†". Biochemistry. 46 (18): 5283–5292. doi:10.1021/bi700468t. PMID 17439161.
  85. ^ Davidson VL, Wilmot CM (2013). "Posttranslational biosynthesis of the protein-derived cofactor tryptophan tryptophylquinone". Annual Review of Biochemistry. 82: 531–50. doi:10.1146/annurev-biochem-051110-133601. PMC 4082410. PMID 23746262.
  86. ^ Huang SX, Lohman JR, Huang T, Shen B (May 2013). "A new member of the 4-methylideneimidazole-5-one-containing aminomutase family from the enediyne kedarcidin biosynthetic pathway". Proceedings of the National Academy of Sciences of the United States of America. 110 (20): 8069–74. Bibcode:2013PNAS..110.8069H. doi:10.1073/pnas.1304733110. PMC 3657804. PMID 23633564.
  87. ^ Lodish, Harvey; Berk, Arnold; Zipursky, S. Lawrence; Matsudaira, Paul; Baltimore, David; Darnell, James (2000-01-01). "G Protein–Coupled Receptors and Their Effectors". Molecular Cell Biology (4th ed.).
  88. ^ O'Malley BW, McKenna NJ (October 2008). "Coactivators and corepressors: what's in a name?". Molecular Endocrinology. 22 (10): 2213–4. doi:10.1210/me.2008-0201. PMC 2582534. PMID 18701638.

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